KINSOLVER
A simulator for biochemical and gene regulatory networks
Documents:
(Submitted for publication)
KINSOLVER:
A simulator for computing large ensembles of biochemical and
gene regulatory networks
(Last update: April 07, 2004)
Dataset Files:
-
Repressilator, Kinsolver,
Gepasi
-
Oregonator, Kinsolver,
Gepasi
-
Oregonator-like, Kinsolver,
Gepasi
-
QA-A, Kinsolver,
Gepasi
-
QA-Tr A, Kinsolver,
Gepasi
-
QA-Tr B, Kinsolver,
Gepasi
-
LAC PTS, Kinsolver,
Gepasi
-
Beer Kinsolver
-
QA-A (one more) Kinsolver
-
Water-Simple Kinsolver
Kinsolver xml (sbml-compliant)
Source Code:
- back-end:
kin.cpp,
kin.h,
kin.exe
(compiled for Unix Solaris),
kin_dos.exe
(compiled for DOS - Windows 98)
- java front-end:
DatasetSpecies.java,
GnuplotServlet.java,
Environment.java,
SpeciesFile.java,
FileUploadServlet.java,
pbm2gif,
(and sample configure and compile scripts
compile.sh,
configure.sh)
Links:
Kinsolver Plots
www.gepasi.org
Scattered Plots (how to create them)
Recent Developments:
- Standardise on a common exchange format called SBML [also with SBW];
status: Completed - Kinsolver now reads a file in SBML ('kinsolver plots' link above)
Last modified: June 04, 2006; Boanerges Aleman-Meza
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